35 years ago anyone who thought of a
nucleophile attacking a C=O group, imagined its approaching
along path "A" from straight above the carbon. Thinking in a more sophisticated way
about achieving maximum overlap, one might have thought that
approach from direction "B" would make more sense, because
it avoids unfavorable overlap with the top of the 2p AO of
the oxygen atom. In the 1970s Hans-Beat Bürgi and
Jack Dunitz in Zurich devised a way to get a sort of "movie"
of nitrogen "attacking" a carbonyl group. Their method was
to find x-ray crystal structures of many different compounds
that had both C=O groups and nitrogen atoms, and to plot
positions of the relevant atoms (N, C, O, and the two other
atoms attached to C) on the same graph. The graph at the right superimposes 14 of
these structures with N-C distances less than 3Ċ (A
through O) such that: All oxygens fall on the same C-O line
(only A and L are shown) All nitrogens lie in the plane of the
page (as do C and O) and are labeled
A-O The two R groups of each compound lie
in and out of the plane of the figure on top of one
another to the left of C and are labeled A-O.
Bürgi and Dunitz noticed what you
notice from the graph: Furthermore, the closer N gets to C
(note particularly structures
H, I, K,
L), the longer the C-O
bond gets, and the more the R groups bend back, in all
cases approaching the geometry expected in the product
from addition of the nitrogen to the C=O.
They didn't think about HOMOs, LUMOs, and
overlap.
You might wonder what keeps the nitrogen from
adding fully to C=O in these structures that represent early and
intermediate stages of "reaction". Of course the plot above does not
show the other atoms in the 14 molecules pictured. The other atoms
are involved in various bonds and non-bonded repulsions that keep the
nitrogen from approaching the C=O more closely. Although attraction
of the HOMO of nitrogen for the LUMO of C=O may not be enough to
bring them all the way to bonding distance, it seems sufficient to
favor alignment at the appropriate bonding angle, especially once the
atoms come within about 2.4 Ċ.
All central carbons lie exactly
on top of one another
The nitrogen atoms do not group
randomly about the C=O. They tend to be found along a
line that makes an angle of 110° with the C-O bond
(as in "B" above).
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